Step 4: Genotyping

Code file

  • SpaceTracer/steps/step4_genotyping.py

Runtime step name

  • genotyping

What this step does

  • combines Step 3 outputs (umi_combine, cell_num, prior)
  • infers genotype evidence at individual/cluster/spot levels
  • outputs genotype tables used by Step 5 feature branches

Detailed reference page