Step 3: Count and Prior Construction

Code files

  • SpaceTracer/steps/step3_UMI_combine.py
  • SpaceTracer/steps/step3_cell_number.py
  • SpaceTracer/steps/step3_get_prior.py

Runtime step names

  • umi_combine
  • cell_num
  • prior

What this step does

  • umi_combine: aggregates read evidence at UMI level
  • cell_num: builds/provides cell-number support values
  • prior: builds prior frequency table for genotyping

Detailed reference pages