Developer Guide Overview

The most important idea in this codebase is that the framework is reusable even when the final applications are highly scenario-specific.

The project already contains four strong reference commands:

• in_sight/commands/bayesmonstr2insights.py
• in_sight/commands/cf2insights.py
• in_sight/commands/plot2insights.py
• in_sight/commands/scrna2insights.py

These are not just CLI tools. They are examples of how to build applications on top of the core framework:

• data ingestion
• region parsing
• read extraction
• dataframe generation
• R-backed visualization
• report or workflow orchestration

Recommended Reading Order

1. Read Framework Architecture.
2. Read Command Reference Patterns.
3. Read Build Scenario Apps.
4. Read Build Your Python Project Documentation With MkDocs.